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A- ACML library, ACML Library
- application development, Developing Applications
- building parallel applications, Building Parallel Applications
- building serial applications, Building Serial Applications
- communication between nodes, Communication Between Nodes
- compiling and linking parallel applications, Compiling and Linking HP-MPI Applications
- compiling and linking serial applications, Building Serial Applications, Compiling and Linking Serial Applications
- debugging parallel applications, Debugging Parallel Applications
- debugging serial applications, Debugging Serial Applications
- debugging with TotalView, Debugging with TotalView
- determining available resources for, Determining Available LSF-HPC System Resources
- developing libraries, Developing Libraries
- developing parallel applications, Developing Parallel Applications
- developing serial applications, Developing Serial Applications
- examining core availability, Examining Nodes and Partitions Before Running Jobs
- example parallel applications, Examples
- example serial applications, Examples
- Fortran, Intel Fortran and C/C++Compilers
- GNU make, Using the GNU Parallel Make Capability
- I/O performance considerations, I/O Performance Considerations
- linking with pthreads, Pthreads
- parallel application build environment, Parallel Application Build Environment
- parallel application programming model, Parallel Application Build Environment
- Pathscale, Pathscale Compilers
- private file view, Private File View
- running serial applications, Building Serial Applications
- serial application programming model, Serial Application Build Environment
- shared file view, Shared File View
- using GNU C/C++, GNU C and C++ Compilers
- using GNU make, GNU Parallel Make
- using libraries, Other Libraries
- using MKL library, MKL Library
- using modulefiles, Modulefiles
- using MPI library, MPI Library
- using PGI, PGI Fortran and C/C++ Compilers
- using pthreads, Pthreads
- application development environment, Components, Tools, Compilers, Libraries, and Debuggers
- available compilers and libraries, Components, Tools, Compilers, Libraries, and Debuggers
- C, Components, Tools, Compilers, Libraries, and Debuggers
- C++, Components, Tools, Compilers, Libraries, and Debuggers
- compilers, Application Development Environment, Components, Tools, Compilers, Libraries, and Debuggers
- determining resources in, Determining Available LSF-HPC System Resources
- for parallel applications, Parallel Application Build Environment
- Intel Fortran, Components, Tools, Compilers, Libraries, and Debuggers
- libraries, Application Development Environment, Components, Tools, Compilers, Libraries, and Debuggers
- MPI library, Application Development Environment, MPI Library
- overview of, Application Development Environment
- parallel applications, Parallel Applications
- serial applications, Serial Applications
- application tuning, Tuning Applications
B- batch system manager, Overview of LSF-HPC
- bhist command, Getting Information About Jobs, Viewing the Historical Information for a Job
- bhosts command, Getting the Status of LSF-HPC
- examining host resources, Getting the Status of LSF-HPC
- bjobs command, Getting Information About Jobs, Examining the Status of a Job
- getting job status, Examining the Status of a Job
- bsub command, Submitting Jobs, Summary of the LSF bsub Command Format
- building parallel applications, Building Parallel Applications
- building serial applications, Building Serial Applications
C- C, Components, Tools, Compilers, Libraries, and Debuggers
- C++, Components, Tools, Compilers, Libraries, and Debuggers
- client node, System Architecture
- commands, Commands
- bhist, Getting Information About Jobs, Viewing the Historical Information for a Job
- bhosts, Getting the Status of LSF-HPC
- bjobs, Getting Information About Jobs, Examining the Status of a Job
- bsub, Submitting Jobs, Summary of the LSF bsub Command Format
- ecc, Compiler Commands
- efc, Compiler Commands
- g77, Compiler Commands
- gcc, Compiler Commands
- gcc++, Compiler Commands
- icc, Compiler Commands
- ifort, Compiler Commands
- lshosts, Getting Information About LSF Execution Host Node
- lsid, Determining the LSF Cluster Name and the LSF Execution Host, Determining the LSF Execution Host
- lsload, Getting Host Load Information
- pathCC, Compiler Commands
- pathcc, Compiler Commands
- pathf77, Compiler Commands
- pathf95, Compiler Commands
- pgCC, Compiler Commands
- pgcc, Compiler Commands
- pgf77, Compiler Commands
- pgf95, Compiler Commands
- scancel, Terminating Jobs with the scancel Command
- sinfo, Getting System Information with the sinfo Command, Getting Information About the lsf Partition
- squeue, Monitoring Jobs with the squeue Command
- srun, Interrupting a Job, Launching Jobs with the srun Command
- compiler
- commands, Compiler Commands
- Fortran, PGI Fortran and C/C++ Compilers, Pathscale Compilers
- compilers, Components, Tools, Compilers, Libraries, and Debuggers
- Fortran, Intel Fortran and C/C++Compilers
- GNU C and C++, GNU C and C++ Compilers
- Intel, Compilers
- Pathscale, Compilers
- Pathscale C and C++, Pathscale Compilers
- Pathscale Fortran, Pathscale Compilers
- PGI, Compilers
- PGI C and C++, PGI Fortran and C/C++ Compilers
- PGI Fortran, PGI Fortran and C/C++ Compilers
- standard Linux, Compilers
- compiling and linking HP-MPI applications, Compiling and Linking HP-MPI Applications
- compiling and linking serial applications, Building Serial Applications, Compiling and Linking Serial Applications
- compute node, Application Development Environment Overview
- configuring local disk, Local Disks on Compute Nodes
- core availability, Examining Nodes and Partitions Before Running Jobs
D- DDT, Debugging Parallel Applications
- debugger
- TotalView, Debugging with TotalView
- debugging
- DDT, Debugging Parallel Applications
- gdb, Debugging Serial Applications
- idb, Debugging Serial Applications
- pgdbg, Debugging Serial Applications
- TotalView, Debugging Parallel Applications
- debugging options
- setting, Setting Debugging Options
- debugging parallel applications, Debugging Parallel Applications
- debugging serial applications, Debugging Serial Applications
- determining LSF execution host, Determining the LSF Execution Host
- developing applications, Developing Applications
- developing libraries, Developing Libraries
- developing parallel applications, Developing Parallel Applications
- developing serial applications, Developing Serial Applications
G- gdb, Debugging Serial Applications
- GNU, Components, Tools, Compilers, Libraries, and Debuggers
- modulefile, Supplied Modulefiles
- GNU C/C++
- building parallel applications, GNU C and C++ Compilers
- GNU make
- building parallel applications, GNU Parallel Make, Using the GNU Parallel Make Capability
H- head node, System Architecture
- historical information of jobs, Viewing the Historical Information for a Job
- HP XC system (see system)
- HP XC user commands (see commands)
- HP-MPI, Components, Tools, Compilers, Libraries, and Debuggers, HP-MPI, Submitting a Parallel Job That Uses the HP-MPI Message Passing Interface, Using the Intel Trace Collector and Intel Trace Analyzer
- compiler utilities, Compiling and Linking HP-MPI Applications
- using srun with, Using the srun Command with HP-MPI
J- job
- examining status, Examining the Status of a Job
- getting information about, Getting Information About Jobs
- history, Viewing the Historical Information for a Job
- interruption, Interrupting a Job
- killing, Terminating Jobs with the scancel Command
- monitoring, Monitoring Jobs with the squeue Command
- sending a signal to, Terminating Jobs with the scancel Command
- submission, Submitting Jobs
- submission from non-HP XC host, Submitting a Job from a Non-HP XC Host
- job accounting, Job Accounting
- job allocation information
- obtaining, Getting Job Allocation Information
- job manager, Overview of LSF-HPC
- job scheduler, Overview of LSF-HPC
- JOBID translation, Translating SLURM and LSF-HPC JOBIDs
L- launching jobs
- srun, Launching Jobs with the srun Command
- libraries, Components, Tools, Compilers, Libraries, and Debuggers
- building parallel applications, Other Libraries
- library development, Developing Libraries
- Linux manpages
- manpages, Getting System Help and Information
- local disk
- configuring, Local Disks on Compute Nodes
- login node, Application Development Environment Overview
- login procedure, Logging In to the System
- LSF HPC
- documentation, Supplementary Information
- lsf partition, Getting Information About LSF Execution Host Node
- obtaining information, Getting Information About the lsf Partition
- LSF-HPC, Using LSF, Introduction to LSF-HPC in the HP XC Environment, Overview of LSF-HPC
- bhist command, Translating SLURM and LSF-HPC JOBIDs
- bhosts command, Getting the Status of LSF-HPC
- bjobs command, Examining the Status of a Job, Translating SLURM and LSF-HPC JOBIDs
- bqueues command, Examining LSF-HPC System Queues
- bsub command, Submitting Jobs, Translating SLURM and LSF-HPC JOBIDs
- determining available system resources, Determining Available LSF-HPC System Resources
- differences from standard LSF, Differences Between LSF-HPC and Standard LSF
- displaying host load information, Getting Host Load Information
- examining system queues, Examining LSF-HPC System Queues
- execution host, Getting Host Load Information
- getting job information, Getting Information About Jobs
- getting job status, Examining the Status of a Job
- interaction with SLURM, How LSF-HPC and SLURM Launch and Manage a Job
- job control, Job Startup and Job Control
- job preemption, Preemption
- job startup, Job Startup and Job Control
- job status, Translating SLURM and LSF-HPC JOBIDs
- JOBID, Translating SLURM and LSF-HPC JOBIDs
- lshosts command, Getting Information About LSF Execution Host Node
- lsid command, Determining the LSF Execution Host
- lsload command, Getting Host Load Information
- submitting jobs, Submitting Jobs
- summary of bsub command, Summary of the LSF bsub Command Format
- using srun with, Using the srun Command with LSF-HPC
- viewing historical information of jobs, Viewing the Historical Information for a Job
- LSF-SLURM external scheduler, Overview of Job Submission
- lshosts command, Getting Information About LSF Execution Host Node
- examining host resources, Getting Information About LSF Execution Host Node
- lsid command, Determining the LSF Cluster Name and the LSF Execution Host, Determining the LSF Execution Host
- lsload command, Getting Host Load Information
- LVS
- routing login requests, LVS Login Routing
M- Makefile (see GNU make)
- manpage
- HP XC, Getting System Help and Information
- Linux, Getting System Help and Information
- third-party vendor, Getting System Help and Information
- MANPATH environment variable
- setting with a module, Supplied Modulefiles
- math library, MKL Library
- MKL library
- building parallel applications, MKL Library
- module commands
- avail command, Viewing Available Modulefiles
- list command, Viewing Loaded Modulefiles
- load command, Overview of Modules, Loading a Modulefile
- unload command, Unloading a Modulefile
- modulefile, Overview of Modules
- automatically loading at login, Automatically Loading a Modulefile at Login
- configuring parallel build environment, Modulefiles
- conflicts, Modulefile Conflicts
- creating, Creating a Modulefile
- default modulefiles loaded, Modulefiles Automatically Loaded on the System
- GNU modulefile, Supplied Modulefiles
- Intel modulefile, Supplied Modulefiles
- loading, Loading a Modulefile
- loading for current session, Loading a Modulefile for the Current Session
- mpi modulefile, Supplied Modulefiles
- setting shell variables, Overview of Modules
- supplied modulefiles, Supplied Modulefiles
- unloading, Unloading a Modulefile
- viewing available modulefiles, Viewing Available Modulefiles
- viewing loaded modulefiles, Viewing Loaded Modulefiles
- viewing modulefile-specific help, Viewing Modulefile-Specific Help
- modules software, Overview of Modules
- MPI library
- building parallel applications, MPI Library
P- parallel application
- build environment, Parallel Application Build Environment
- building, Building Parallel Applications
- compiling and linking, Compiling and Linking HP-MPI Applications
- debugging, Debugging Parallel Applications
- debugging with TotalView, Debugging with TotalView
- developing, Developing Applications
- environment for developing, Parallel Applications
- examples of, Examples
- partition
- reporting state of, Getting System Information with the sinfo Command
- PATH environment variable
- setting with a module, Supplied Modulefiles
- Pathscale
- building parallel applications, Pathscale Compilers
- Pathscale compilers, Compilers
- Pathscale Fortran (see Fortran)
- performance considerations, I/O Performance Considerations
- pgdbg, Debugging Serial Applications
- PGI
- building parallel applications, PGI Fortran and C/C++ Compilers
- PGI compilers, Compilers
- PGI Fortran (see Fortran)
- private file view, Private File View
- program development (see application development)
- programming environment
- compilers, Application Development Environment
- developing applications, Application Development Environment
- libraries, Application Development Environment
- pthreads
- linking requirements, Pthreads
- MKL library, MKL Library
- restrictions on using, Pthreads
S- scancel command, Terminating Jobs with the scancel Command
- secure shell (see ssh)
- security, Enabling Remote Execution with OpenSSH
- SLURM, Security
- serial applications
- building, Building Serial Applications
- compiling and linking, Compiling and Linking Serial Applications
- debugging, Debugging Serial Applications
- developing, Serial Applications, Developing Applications, Developing Serial Applications
- examples of, Examples
- programming model, Serial Application Build Environment
- shared file view, Shared File View
- signal
- sending to a job, Terminating Jobs with the scancel Command
- Simple Linux Utility for Resource Management (see SLURM)
- sinfo command, Getting System Information with the sinfo Command, Getting Information About the lsf Partition
- SLURM, Using SLURM
- fault tolerance, Fault Tolerance
- interaction with LSF-HPC, How LSF-HPC and SLURM Launch and Manage a Job
- job accounting, Job Accounting
- lsf partition, Getting Information About LSF Execution Host Node
- security model, Security
- SLURM_JOBID environment variable, Getting Job Allocation Information, Translating SLURM and LSF-HPC JOBIDs
- SLURM_NPROCS environment variable, Getting Job Allocation Information
- submitting a serial job, Submitting a Serial Job Through SLURM only
- utilities, SLURM Utilities
- SLURM commands
- sacct, Job Accounting
- scancel, Terminating Jobs with the scancel Command
- sinfo, Getting System Information with the sinfo Command, Getting Information About the lsf Partition
- squeue, Monitoring Jobs with the squeue Command
- srun, Interrupting a Job, Launching Jobs with the srun Command
- squeue command, Monitoring Jobs with the squeue Command
- srun, Launching Jobs with the srun Command
- used with HP-MPI, Using the srun Command with HP-MPI
- used with LSF-HPC, Using the srun Command with LSF-HPC
- srun command, Launching Jobs with the srun Command
- interrupting jobs, Interrupting a Job
- LSF-HPC equivalents, LSF-HPC Equivalents of SLURM srun Options
- ssh, Using the Secure Shell to Log In
- ssh_create_shared_keys command, Using the Secure Shell to Log In, Enabling Remote Execution with OpenSSH
- submitting a batch job, Submitting a Batch Job or Job Script
- submitting a job, Submitting a Parallel Job That Uses the HP-MPI Message Passing Interface
- overview, Overview of Job Submission
- submitting a job script, Submitting a Batch Job or Job Script
- submitting a parallel job, Submitting a Non-MPI Parallel Job
- submitting a serial job, Submitting a Serial Job Using LSF-HPC
- through SLURM, Submitting a Serial Job Through SLURM only
- with the LSF bsub command, Submitting a Serial Job with the LSF bsub Command
- submitting an HP-MPI job, Submitting a Parallel Job That Uses the HP-MPI Message Passing Interface
- system, Using the System
- architecture, System Architecture
- developing applications on, Developing Applications
- information, Getting System Information with the sinfo Command
- logging in, Logging In to the System
- overview, Overview of the User Environment
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